it looks like someone did the daughter card elimination mod to the PCB, operators often performed the mod on MS Pacman because the reliability of the
game was poor due to the ribbon cable that ran from the PCB to the daughter card.
I have a PCB with this mod, and it is more trouble free than the one with the stock daughter card.
All MS Pacman PCB's are actually Pacman PCB's with different character roms and the daugther card.
I don't see anything to indicate your PCB has been swapped out, just modified.
(although it is certainly possible, IIRC there is a way of checking by matching PCB serial numbers to the cabinet)
here is some info on the mod
http://www.pinrepair.com/video/pacman.htm I think it's mod #3
My explanation for your double burned monitor is a simple one, it appears like it was setup with the factory settings long enough to get burned in
and then sometime later, an operator readjusted the monitor to compensate for aging components in the monitor chassis
and then got the second burn, monitor image placement is all about settings on the monitor and not usually the PCB itself.
I see two cut wires on your monitor chassis, a tan wire near the power cord which in most cases would attach to any field ground (like the ground wire on the main AC power cable, or on the AC line filter ground)
and the black wire from the neck board, which should connect to the aquadag groundstrap wire, this wire is often cut to remove the chassis for repair, and can be reconnected with a wire nut or crimp quick disconnect terminals.
You lucked out getting a Wells Gardner 4900 in this cab, it is a good monitor and after a recap and reflow should provide a great picture and service for years to come.
Tube swaps are also possible if you can find a 19" TV with a compatible tube.
I always recommend that when someone gets a ms pacman that they check all the fuses and the fuse holders on the bottom of the game as they are often in need of replacement.
I hope I'm not getting too technical :-) Let me know if I am.